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Agarose LE - Standard Agarose

CAS Nr.: 9012-36-6
EC Nr.: 232-731-8
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Product information "Agarose LE - Standard Agarose"

Agarose LE is a standard agarose for the separation of DNA in the size range between 100bp and 25kbp. It is suitable for all analytical and preparative electrophoresis of nucleic acids in routine gel electrophoresis. Depending on the concentration of Agarose LE used, the size range of nucleic acid separation will vary between 100bp and 25kbp. The low EEO makes this useful for a broad range of applications: PCR product analysis, restriction enzyme digest analysis, separation of RNA before blotting, etc.

This agarose is comparable with, e.g. Agarose BioRagent, low EEO from Sigma or with the Universal-Agarose, peqGOLD from Peqlab. Free Taq DNA Polymerase test sample available! No shipping costs within Germany.

Genaxxon offers Agaroses for different purposes. Two melting point options and normal or high resolution separation of DNA fragments are available.

Standard normal melting agarose M3044 with standard resolution used in routine DNA electrophoresis for separation of a wide range of DNA fragments from 100bp up to 25kbp. This agarose is available as powder (M3044 Agarose LE >) or as high-quality, multi-purpose tablets (M3054 >) available in blister packaging in 200 or 1,000 tablet quantities. They are compact, pre-weight and therefore easy-to-use.
Low melting/gelling temperature agarose recommended for rapid DNA gel extraction with the agarose-digesting enzyme, agarase, as well as for "in-gel" DNA treatment with enzymes or for bacterial transformation with nucleic acids directly after re-melting the gel.

High resolution agarose (normal melting or low melting) for high resolution elektrophoresis to differentiate DNA fragments with only 2 bp size difference: M3046 Agarose Tiny > (low melt, high resolution comparable to NuSieve®), or M3047 Agarose Tiny HT > (high gel strength, high resolution comparable to SeaKem®).

For the nontoxic staining of nucleic acids in agarose gels the highly sensitive fluorescent dye SafeGel red stain (M3193) or SafeGel green stain (M3191) is recommended.

FAQs
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The pore size of the agarose gel depends on the concentration of the agarose. Higher concentrations lead to smaller pores and a firmer gel, which affects the separation of larger DNA fragments. Lower concentrations result in a softer gel with larger pores for smaller fragments.
The choice of the right agarose depends on the size of the DNA or RNA fragments you want to separate, as well as the type of application planned. Genaxxon offers a range of agaroses, including standard agarose, high-resolution agarose, and low-melting agarose, which are suitable for various applications such as blotting, PFGE, in-gel analyses, and more. If you're unsure which agarose is right for your application, feel free to contact our technical support at info@genaxxon.com.
For separating small DNA fragments or for high-resolution applications, high-resolution agaroses are ideal. These agaroses can reveal differences of just a few base pairs (2-3 bp) and are excellent for allele sizing experiments or mutation analysis. Genaxxon offers two high-resolution agaroses: M3046 – Agarose Tiny and M3047 – Agarose Tiny HT.
Low-melting agarose has a lower melting point and is especially suited for rapid DNA extraction from gels and in-gel processing. It is also ideal for re-isolating DNA and RNA and for conducting phage plaque assays. Genaxxon offers two low-melting agaroses: M3046 – Agarose Tiny and M3049 – Agarose LM – low melting.
Low-melting agarose is particularly useful in cell culture applications, such as phage plaque assays. It aids in the rapid extraction of DNA and is used in cell culture to test virus concentrations. For these applications, Genaxxon offers M3049 – Agarose LM – low melting.
For blotting experiments, such as Southern blotting, Genaxxon recommends agaroses like Agarose LE (M3044)Agarose Tiny HT (M3047), and Agarose Mega (M3051), which enable precise separation and transfer of DNA onto a membrane.
Pulsed-Field Gel Electrophoresis (PFGE) is a method for separating DNA fragments larger than 30 kb. Genaxxon recommends Agarose Mega (M3051) for PFGE, which provides better resolution of large DNA fragments.

Specifications:
Electroendosmosis (EEO): <0.12
Sulfate: <0.2%
Gel strength (1.0%): >1000 g/cm2
Gel strength (1.5%): >2300 g/cm2
Gelling temperature: +36°C (+/- 1.5°C)
Melting temperature: <89°C
Water content: <9%
pH-value in water: 6.0 to 7.0 (1% in water)
DNAses and RNAses: not detected.
DNA binding: not detected

Application:

For analytical and preparative DNA gel electrophoresis

Source:

seaweed

Classification:

EC no: 232-731-8
CAS no.: 9012-36-6
eclass no.: 32-16-04-03
Documents - Protocols - Downloads :
Here you will find information and further literature. For further documents (certificates with additional lot numbers, safety data sheets in other languages, further product information) please contact Genaxxon biosience at: info@genaxxon.com or phone: +49 731 3608 123.


Documents:

Safety Data Sheet
Certificate
Manuals
Spec. Product Description
General Data 1
General Data 2

Brief instructions for a standard agarose gel (2%, 100mL)

  • Weigh 2g agarose LE into a heat-resistant bottle.
  • Prepare a 1% TAE solution in a 1L flask (e.g. 20mL 50X ready-to-use TAE buffer solution > fill up to 1000mL distilled water), stir well..
  • Add 100mL of this solution to the agarose, swirl gently until the agarose has dispersed in the liquid.
  • Carefully heat this agarose solution in the microwave at short intervals until the agarose has completely dissolved. A clear solution is formed.
  • Caution: The solution can easily boil over during heating, always observe and choose short intervals!
  • Caution: Solution becomes very hot, use gloves! Avoid boiling delay! Wear safety goggles!
  • The solution should be cooled to approx. 50-60°C (glass can just be touched).
  • Depending on the application, a gel dye, e.g. SafeGel red stain > (~10µL per 100mL gel, depending on the desired intensity of the bands) is added to the gel and evenly distributed.
  • The solution is now carefully poured into the prepared slide (with comb) of an electrophoresis chamber.
  • Caution: If the gel solution is still too hot, there is a risk that it will leak through insufficiently sealed cracks in the slide or that the slide will break! If the solution has cooled down too much, the gel will already have gelled!
  • Allow the gel to solidify for approx. 1 hour.
  • Add the remainder of the 1X TAE buffer to the prepared electrophoresis chamber and place the gel with slide in the appropriate position (pockets are on top). The gel must be completely covered with liquid. The comb is pulled out before electrophoresis.
  • Before applying the samples, it is recommended to rinse the pockets with the running buffer to remove gel residues.
  • Important: The TAE concentration of the electrophoresis buffer (running buffer) must match the concentration in the gel!
  • The PCR product is mixed with loading buffer (e.g. DNA loading buffer I >) (6X loading buffer: 5µL product + 1µL loading buffer) and carefully added to the pockets.
  • The step of mixing with a loading buffer is omitted when using a master mix in the PCR, in which a loading buffer is already integrated (e.g. Genaxxon's RedMasterMix 2X Taq PCR Mastermix with red dye >).
  • The additional application of a DNA size marker is recommended (e.g. GenLadder 100bp + 1.5kb, ready-to-use >), approx. 5-6µL per lane.
  • Depending on the device manufacturer's specifications, gel electrophoresis can now be started after the electrodes have been attached. The negatively charged DNA will migrate towards the positive pole. Example: 120V, 160 mA, 50W.
    The running time depends on the desired result (on average 0.5-1 hour). The result can be recorded with a photo documentation device.
Listed below are articles and references, in which the authors trust in the high quality of this Genaxxon product.
Source: NCBI PubMed

Impact of the Voltage-Gated Calcium Channel Antagonist Nimodipine on the Development of Oligodendrocyte Precursor Cells.
Michael Enders, Alicia Weier, Rittika Chunder, Young An, Franziska Bremm, Andreas Feigenspan, Christian Buettner, Arif B. Ekici, Enrico Mingardo, Benjamin Odermatt, Stefanie Kuerten
Int J Mol Sci. 2023 Feb;24(4):3716.
doi: 10.3390/ijms24043716.
PMCID: PMC9960570.

Induced Variations in Brassinosteroid Genes Define Barley Height and Sturdiness, and Expand the Green Revolution Genetic Toolkit
Christoph Dockter, Damian Gruszka, Ilka Braumann, Arnis Druka, Ilze Druka, Jerome Franckowiak, Simon P. Gough, Anna Janeczko, Marzena Kurowska, Joakim Lundqvist, Udda Lundqvist, Marek Marzec, Izabela Matyszczak, André H. Müller, Jana Oklestkova, Burkhard Schulz, Shakhira Zakhrabekova, Mats Hansson
Plant Physiol. 2014 Dec; 166(4): 1912–1927. 
doi: 10.1104/pp.114.250738
PMCID: PMC4256852

The role of rotavirus associated with pediatric gastroenteritis in a general hospital in Lagos, Nigeria
Philip Ifesinachi Anochie, Edwina Chinwe Onyeneke, Emmanuel Osaretin Asowata, Ebelechukwu Afocha, Anthony Chidiebere Onyeozirila, Angelina Chinyere Ogu, Bestman Chukwuemeka Onyeneke
Germs. 2013 Sep; 3(3): 81–89.
doi: 10.11599/germs.2013.1041
PMCID: PMC3882862

Connectivity from OR37 expressing olfactory sensory neurons to distinct cell types in the hypothalamus
Andrea Bader, Bettina Klein, Heinz Breer, Jörg Strotmann
Front Neural Circuits. 2012; 6: 84. 
doi: 10.3389/fncir.2012.00084
PMCID: PMC3499762

Agaroses – A Solution for Every Application from GENAXXON!

Find the perfect agarose for your applications – clearly explained and with practical tips!
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Taq Polymerase from Genaxxon

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Taq Polymerase from Genaxxon

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RedMasterMix (2x) - PCR MasterMix with red dye to help visualize pipetting and mixing steps. Electrophoresis can be performed immediately after PCR without the need of a gel loading buffer. This makes this MasterMix time efficient, cost efficient and a reliable choice for the best PCR results with high efficiency.  One tube, one pipetting step. RedMasterMix (2x) is delivered to you as a optimized, ready-to-use solution containing- Taq DNA Polymerase - dNTPs- MgCl2- a red dye- reaction bufferfor efficient amplification of DNA. Additionally the RedMasterMix (2x) contains an additive and a red dye for proceeding with electrophoresis after PCR without adding loading buffer. Just add your primers and template DNA. This PCR MasterMix (2x) has been optimized for use in routine PCR amplification of DNA templates in the range of 0.2-4kb. The special formulation of our PCR RedMasterMix (2x) can withstand repeated freezing/thawing without compromising yields, sensitivity or results, when used as directed. The PCR MasterMix with red dye is efficient (no left over of reagents), scalable from 10µL to 50µL and stable for at least 24 months.Our RedMastermix can also be used for Sanger sequencing. Just dilute the PCR reaction 1:8 after PCR, or purify using spin columns and then apply. Read now in our blog how Genaxxon's RedMasterMix can also simplify your laboratory work. Our Agaroses > and DNA Ladders > are ideally suited for subsequent electrophoresis of PCR products.

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dNTP Mix (Na salt) - 10mM

Deoxynucleotide (dNTP) Solution Mix as an equimolar solution of ultrapure, HPLC purified (>99%) dATP, dCTP, dGTP and dTTP for qPCR, RT-PCR, standard PCR, and Klenow reactions. The Genaxxon dNTP solutions are optimized for use in DNA amplification and other related methods. The Genaxxon dNTPs and dNTP-mixes contain no measurable bacterial or human DNA. For long term storage and/or for repeated use we do recommend to aliquot the stock solutions. Mixture of dNTP sodium salts (dATP, dCTP, dGTP und dTTP) Concentration: 10 mM each nucleotide Please have also a look on our broad range of nucleotides especially the dNTP mix withv2 mM dNTP mix , our dNTP set, or modified nucleotides, e.g. Biotin-11-dUTP. You can get additional products for your successful PCR as our Taq DNA Polymerse (M3001), or our proof-reading polymerases Pfu (M3004), Pwo (M3002) and ReproFast (M3003), as well as the ready-to-use RedMastermix (M3029), already including dNTPs.

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3-in-1 formula of the Red MasterMix Fluoro

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Low melting Agarose Tiny from Genaxxon - M3046

Agarose Tiny is a low-melting high resolution agarose that is suitable for molecular biology applications and produces gels with better separation properties and greater clarity than standard agarose. It is very transparent even at high gel concentrations (3.0 - 4.5%) and can be used with all buffer systems. The low melting temperature makes Agarose Tiny ideal for preparative DNA and RNA electrophoresis, while the low gelling temperature is ideal for tissue culture cell cloning experiments and viral plaque assays. In addition to the above mentioned properties, Agarose Tiny can also be used for high-resolution (2 bp) gel electrophoresis in the range from 10 to 500 bp. Example: PCR products or small DNA fragments after restriction digestion or in mutation analyses. Features:Like Lonza's SeaPlaque™, Agarose Tiny has a low melting point (<64°C, 3.0% gel) and gel point (<25°C, 3.0% gel) and low DNA-binding capacity. Their use is particularly recommended for preparative RNA and DNA gels. Genaxxon offers Agaroses for different purposes. Two melting point options and normal or high resolution separation of DNA fragments are available. Standard agarose high melting point agarose M3044 with standard resolution used in routine DNA electrophoresis for separation of a wide range of DNA fragments from 50bp up to 20kbp. This agarose is available as powder (M3044 Agarose LE >) or as high-quality, multi-purpose tablets (M3054 >) available in blister packaging in 200 or 1,000 tablet quantities. These are compact, pre-weight and therefore easy-to-use. Low melting/gelling temperature agarose recommended for rapid DNA gel extraction with the agarose-digesting enzyme, Agarase, as well as for “in-gel’ DNA treatment with enzymes or for bacterial transformation with nucleic acids directly after re-melting the gel. High resolution agarose (normal melting or low melting) for high resolution elektrophoresis to differentiate DNA fragments with only 2 bp size difference: M3046 Agarose Tiny > (low melt, high resolution comparable to NuSieve®), or M3047 Agarose Tiny HT > (high gel strength, high resolution comparable to SeaKem®). For the nontoxic staining of nucleic acids in agarose gels the highly sensitive fluorescent dye SafeGel red stain (M3193) or SafeGel green stain (M3191) is recommended.Recommended for the following applications:- RFLP (Restriction Fragment Length Polymorphism - AMPFLP (Amplified Fragment Length Polymorphism) - HVR (Hyper-Variable Regionen) - VNTR (Variable Numbers of Tandem Repeats) - STR (Short Tandem Repeats) - Tri und Tetra Nukleotid repeats

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Agarose LM - chemical structure

Agarose LM is the original low melting agarose. This "molecular biology grade" agarose gives gels with better properties and higher transparency than the standard normal melting point agarose. The agarose is equivalent to SeaPlaque™ from Lonza. Agarose LM is a low melting agarose with a very high separation capacity for large DNA fragments (>1000 bp), RNA and proteins. Enzymatic manipulations (eg, digestion, ligation, PCR, etc.) can be performed in the molten gel. Extraction of the DNA is therefore not necessary. Low melting Agarose LM is excellently suited for digestion with β-agarase (S5223). Large DNA fragments can be isolated very gently. The low melting agarose LM is used in the analytical and preparative field. For optimal results, the gel should be stored for at least 1 hour before use at +2°C to +8°C. Genaxxon offers agaroses for a wide variety of applications. There are agaroses with different melting points or with normal or high-resolution separation properties of DNA fragments. Standard melting point agarose M3044 with standard resolution used in routine DNA electrophoresis for separation of a wide range of DNA fragments from 50bp up to 20kbp. This agarose is available as powder (Standard Agarose LE (M3044 >)) or as high-quality, multi-purpose tablets (M3054 >) available in blister packaging in 200 or 1,000 tablet quantities. These are compact, pre-weight and therefore easy-to-use. Low melting/gelling temperature agarose recommended for rapid DNA gel extraction with the agarose-digesting enzyme, Agarase, as well as for “in-gel’ DNA treatment with enzymes or for bacterial transformation with nucleic acids directly after re-melting the gel. High resolution agarose (normal melting or low melting) for high resolution elektrophoresis to differentiate DNA fragments with only 2 bp size difference: M3046 Agarose Tiny > (low melt, high resolution comparable to NuSieve®), or M3047 Agarose Tiny HT > (high gel strength, high resolution comparable to SeaKem®). For the nontoxic staining of nucleic acids in agarose gels the highly sensitive fluorescent dye SafeGel red stain (M3193) or SafeGel green stain (M3191) is recommended.

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Agarose LE tablets

Agarose LE tablets of 0.5g each for separation of DNA in the size range between 100bp and 25kbp. Agarose LE is suitable for all analytical and preparative electrophoresis of nucleic acids in routine gel electrophoresis. Depending on the concentration of Agarose LE used, the size range of nucleic acid separation will vary between 100bp and 25kbp. The low EEO makes this useful for a broad range of applications: PCR product analysis, restriction enzyme digest analysis, separation of RNA before blotting, etc.. Very easy to handle: No weighing No dust Easy to dissolve Comparable to SeaKem® LE. Genaxxon offers Agaroses for different purposes. Two melting point options and normal or high resolution separation of DNA fragments are available.Standard high melting point agarose M3044 with standard resolution used in routine DNA electrophoresis for separation of a wide range of DNA fragments from 50bp up to 50kbp. This agarose is available as powder (M3044 Agarose LE >) or as high-quality, multi-purpose tablets (M3054 >) available in blister packaging in 200 or 1,000 tablet quantities. They are compact, pre-weight and therefore easy-to-use. Low melting/gelling temperature agarose recommended for rapid DNA gel extraction with the agarose-digesting enzyme, agarase, as well as for "in-gel" DNA treatment with enzymes or for bacterial transformation with nucleic acids directly after re-melting the gel. High resolution agarose (normal melting or low melting) for high resolution elektrophoresis to differentiate DNA fragments with only 2 bp size difference: M3046 Agarose Tiny > (low melt, high resolution comparable to NuSieve®), or M3047 Agarose Tiny HT > (high gel strength, high resolution comparable to SeaKem®). For the nontoxic staining of nucleic acids in agarose gels the highly sensitive fluorescent dye SafeGel red stain (M3193) or SafeGel green stain (M3191) is recommended.

Regular price: From €157.55
Agarose Tiny HT von Genaxxon

Our Agarose Tiny HT is a high resolution (+/-2 bp), normal melting agarose for fine resolution of small DNA fragments in the 20 bp to 1500 bp range. It can be used for genotyping, allele sizing and short tandem repeat analysis. Agarose Tiny works as a molecular screen and has twice the resolution of the finest sieving agaroses. It can discriminate between fragments which differ by only 2-4 bp in length and thus, is able to compete with acrylamide gels, being much easier to handle as the latter. Agarose Tiny HT 2% to 4% gels give similar results to Polyacrylamide 6% to 8% gels. For efficient resolution, the concentration of Agarose Tiny HT should be adjusted according to the range of band sizes analyzed, and the gel running buffer used (TAE or TBE). Genaxxon offers Agaroses for different purposes. Two melting point options and normal or high resolution separation of DNA fragments are available.Standard agarose high melting point agarose M3044 with standard resolution used in routine DNA electrophoresis for separation of a wide range of DNA fragments from 50bp up to 20kbp. This agarose is available as powder (M3044 Agarose LE >) or as high-quality, multi-purpose tablets (M3054 >) available in blister packaging in 200 or 1,000 tablet quantities. These are compact, pre-weight and therefore easy-to-use. Low melting/gelling temperature agarose recommended for rapid DNA gel extraction with the agarose-digesting enzyme, Agarase, as well as for “in-gel’ DNA treatment with enzymes or for bacterial transformation with nucleic acids directly after re-melting the gel. High resolution agarose (normal melting or low melting) for high resolution elektrophoresis to differentiate DNA fragments with only 2 bp size difference: M3046 Agarose Tiny > (low melt, high resolution comparable to NuSieve®), or M3047 Agarose Tiny HT > (high gel strength, high resolution comparable to SeaKem®). For the nontoxic staining of nucleic acids in agarose gels the highly sensitive fluorescent dye SafeGel red stain (M3193) or SafeGel green stain (M3191) is recommended.

Regular price: From €91.68